FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14567168
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1643091.1279405852942728No Hit
GGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAAT631800.4337150501731016No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA443360.3043556578739258No Hit
GCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGATTCGGCCACCTCGTTGGTTCTGC306500.21040465792664712No Hit
CTCCATTGCATTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGA288680.19817166933202118No Hit
GGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAATGTAATGCAC246370.16912690236015676No Hit
GCCCTCTTCAAAAACTTCTCCACAACCCTCTGCACCCAGTTTTCCTTGGGGTCCAGACAGAGCTCTCTTCCATC244250.16767157487302956No Hit
GCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAATG239120.1641499569442736No Hit
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGG233060.15998991705182505No Hit
CTCCCAGGGTGTGCTTGTCAAAGAGATATTCCGCCAAGCCAGATTCGGGC217400.1492397149535174No Hit
CCCAGGGTGTGCTTGTCAAAGAGATATTCCGCCAAGCCAGATTCGGGCGC195620.1342882844489746No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT179690.12335273403862713No Hit
CTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCC177730.12200724258826423No Hit
CCCGAGGCTTAGCTTTCATTATCACTGTCTCCCAGGGTGTGCTTGTCAAA154580.10611534101892695No Hit
CTGGTTTCTTGATATCCTGAAGGAAGATTCGGCCACCTCGTTGGTTCTGC149430.10257999358557546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)