FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14567168
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA678700.46591073844964237No Hit
GTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATG381290.2617461403616681No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCA252510.17334186027098747No Hit
CCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACG209400.1437479131153015No Hit
CTCATGAGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGG181210.12439617638788816No Hit
CAGCTAGGTTCTGAAGCTTCTGAGTTCTGCAGACTCACCTCTGAGAAAAC166450.11426380199637981No Hit
CGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAA164010.11258880243572396No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA161480.11085202010438816No Hit
CGTGGACATCCGCAAAGACCTGTACGCCAACACAGTGCTGTCTGGCGGCA157130.10786585285485827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)