FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15598362
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC651290.41753743117386294No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG631130.40461299718521726No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG617750.39603517343680067No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT534360.3425744318538062No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT329560.21127859450883368No Hit
CAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGC272360.17460807743787457No Hit
CCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGG268840.17235143023350785No Hit
GTCCCGGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAG262880.1685305162170233No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT254600.16322226654311522No Hit
CACGGCTTCTATTCGATGATCCGATATGGTAAAATTTATTCAGACTGTAAAGTAGGACCATAGGGGAATTAAGGA243960.15640103749355222No Hit
GTATGGTTTAGGGCCCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGGGAATGTTCGCG243600.15617024402946925No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGGGCTGGCAGGAGTC237300.15213135840801745No Hit
GTCGAATAACATCTACCCAGTGAGTCCTGCAAGACTTCAGGCTCTTTCTC218150.1398544283047156No Hit
GTGCGTCTAGGTCGGGGCAGGAAGGAAGTTACTAGGCTAATTTATATACG187510.12021134013943259No Hit
GCCCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGGGAATGTTCGCGAATATATGCTGA180460.1156916348011413No Hit
GTCCTACATATAGTTATAGAATAACGAAGATTCGGCAGGGTAGAGAGTAT178680.11455048933984222No Hit
GTCTAGGTCGGGGCAGGAAGGAAGTTACTAGGCTAATTTATATACGTCAC175870.11274901813408357No Hit
AGTGCGTCTAGGTCGGGGCAGGAAGGAAGTTACTAGGCTAATTTATATACGTCACGGCTTCTATTCGATGATCCG175420.11246052630397986No Hit
GTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGT165500.10610088418258276No Hit
AATAGGTTCAGGAATACTGTTCTTCTTTATTATCTTCAACAATGGCAAAA162460.10415196159699333No Hit
CCAAGCTTCTGTACCAGATGTATCTCATGCTTCTTCTCCTCCTTAGATGTGCGAACCAGTGAATTGATGTTTTC159740.10240818875725541No Hit
CCCATTTATTATAGGCCAGTGATGTCTCAAAGAGTAGAGGAGCGTCTACT159400.10219021715228817No Hit
CTGTAAATAAATAGGAATGAGAATTAAACAGTGGAAGGAATAAAACACTG156080.10006178853907866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)