FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14341637
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC484410.33776478933332366No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG444540.30996461561535826No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG387360.2700946900273658No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT362860.2530115634637803No Hit
GGCAGGGTAGAGAGTATGTTAATTGGGAAATGAAGCAATAATGATGTGGC214540.14959240705924992No Hit
CCATAAAGTAAAGATGTCTTCCAGGACAATTTTAATTCCTTCCTGTCTAC188080.13114263037057763No Hit
GGCTAATTTATATACGTCACGGCTTCTATTCGATGATCCGATATGGTAAA182530.12727277925107155No Hit
CTACAGAAAAAATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCA178770.12465104227641517No Hit
CACGGCTTCTATTCGATGATCCGATATGGTAAAATTTATTCAGACTGTAAAGTAGGACCATAGGGGAATTAAGGA168270.11732970232059282No Hit
CTAGGCTAATTTATATACGTCACGGCTTCTATTCGATGATCCGATATGGT158020.11018267998276626No Hit
CCCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGGGAATGTTCGCGAATATATGCTGA152520.10634769238685932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)