FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14341637
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT1178020.8213985614055076No Hit
AGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTC363430.25340900763281066No Hit
AAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCC331390.2310684617104728No Hit
CGGAGGTGGCAGCCATCTCCTTCTCGGCATCATGGCCGCCCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAA220000.15339950383627754No Hit
GATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCC191860.13377831275467367No Hit
CCAAAGTTCGAGCTAAAATCCGTAAGATGAAGGTGACAACAAAAGTCAACCGTCATGACAAAATCAATGGAAAG178500.12446277924897974No Hit
GGAAGATGGCGGACATTCAGACTGAGCGTGCCTACCAAAAGCAGCCGACC159600.11128436732849953No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA157470.10979918122317558No Hit
CCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTTAATTCCCCTATGGTCCTACTTTACAGTCTGAAT154890.10800022340545921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)