FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14139595
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG797470.5639977665555485No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC742890.525396943830428No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG615580.4353590042713388No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT499020.3529238284406307No Hit
ACCTGAAGGAGTCGAATAACATCTATCCAGTGAGTCCTGCAAGACTTCAG245930.17393001709030562No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT241080.17049993298959412No Hit
GAACAGGATTGGAGGTGCTCTCTGGGGTGTCCTCCTACCAAGCAGCCTGT201260.1423378816719998No Hit
GGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCG196020.138631976375561No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC194750.1377337894048592No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGC194260.13738724482561204No Hit
CCCTGCTGAGCCTGGGGCATGGTGGGCCTTGGTCTTCTTCCTCTTCTTGGTCCTTTTTAATTCTGTCCACGTCA188130.13305190141584677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)