FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14139595
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT955890.6760377507276552No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT297390.21032427024960756No Hit
CCCCAGGCTCAGCAGGGAGCTGCTGGCTGAGAAAGAGCCTGAAGTCTTGC255030.1803658449906097No Hit
GCAGGGAGCTGCTGGCTGAGAAAGAGCCTGAAGTCTTGCAGGACTCACTG199570.14114265649051475No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC196190.13875220612754466No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTC195310.13812984035257023No Hit
GAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG192430.13609300690719925No Hit
TCTAACGTGATCAGTTGCAGAAGCATTACACGGTGGCCTGGTTTCTTTAC187160.13236588459570447No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG182630.12916211532225638No Hit
GATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCC181530.12838415810353832No Hit
CGTATATAAATTAGCCTAGTAACTTCCTTCCTGCCCCGACCTAGACGCAC180010.127309162674037No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA175610.12419733379916467No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCA170590.12064701994646947No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGAT164740.1165097020105597No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT145920.10319956123212864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)