FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15034608
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG1247870.8299983611145698No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG887370.5902182484571596No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC846450.5630010439913032No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT718680.4780171189032664No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT490990.3265731969865792No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC306600.20392949387173911No Hit
CACGGCTTCTATTCGATGATCCGATATGGTAAAATTTATTCAGACTGTAAAGTAGGACCATAGGGGAATTAAGGA249820.1661632947131046No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT242870.16154062679918224No Hit
GTTTGCTTTATTGGCCATTTTACCGTATCGTGATGAGAATAATTTTTCTC222000.14765932041593635No Hit
CCTCATCCAGCAGCTCCCTGCTGAGCCTGGGGCATGGTGGGTTTTGATCT191700.12750581857538287No Hit
GTCTCCTTCTTCTTGACTTTCTGGTTTTCTGAGAGGGTTTAATTGCTTCC179000.11905864123627301No Hit
GGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCG176470.11737585708919049No Hit
GCTACGTGAACGCTTCCTTGCAGTGCCTGACATACACACCGCCCCTTGCC176250.11722952803292243No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA172040.11442932200161121No Hit
TCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTGCTGTAGGGCTGGCCTA170390.11333185407960088No Hit
GTCTAGGTCGGGGCAGGAAGGAAGTTACTAGGCTAATTTATATACGTCAC168510.11208140578058304No Hit
GGGACTCTTTTGCCAACTTGGGAATGTTCGCGAATATATGCTGAAGCCGT166800.11094402993413596No Hit
GGTTGGAGTCACAAGGGCCGTGGCTATTTGAACAAGTGATGGCACATTCC164530.10943418012627931No Hit
GCGAAAAATCCACAGTGGCCACAGCTAACATCATTGCAGCACCTTTACTC159190.10588237485140949No Hit
CTAAATTGACCCTGACAACTTACAGTGCGTCTAGGTCGGGGCAGGAAGGA154360.10266978693425197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)