FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13440287
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA649910.48355366220974294No Hit
GTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGT510410.3797612357533734No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCA446610.3322920113238653No Hit
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT385290.2866679855869149No Hit
CAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAG362770.2699123910077218No Hit
GCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGG263580.19611188362272325No Hit
AGAAGACAGTGCAGCCACCTCCGAGAGCCTGGATGTGATGGCGTCACAGA227110.16897704639789313No Hit
TGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG204510.1521619292802304No Hit
AAGAAGACAGTGCAGCCACCTCCGAGAGCCTGGATGTGATGGCGTCACAG185690.13815925210525637No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC155990.1160615096984164No Hit
CACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGC136770.10176121983109439No Hit
GGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGT136690.10170169729262478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)