FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7827544
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG167750.2143073229610718No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA146810.18755563686387455No Hit
CGTGCTTTCATTGTTTTCAACTATGGCTTGTGTGTCATAACCACTGGTGT125490.16031848559394876No Hit
CTGGTGTTCATCCTCTCCTTGCTGCTGGTCCTCATGTTTAACCTTCTCAACTTTCTGCTTGTATTCTGTAAT119100.1521550054525404No Hit
GTGAGTTTTGGGATTTGAGGGTCAAAAAAGGGTATCGTTGGAGATTTAAG118310.1511457489092364No Hit
GTCCGGATCCCGGAGCGAGAAGTCAACACGAGCTTCTGCACCCCACGCTG93350.1192583523005428No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG91570.11698433122828822No Hit
CTGGTTTCTTGATATCCTGAAGGAAGATTCGGCCACCTCGTTGGTTCTGC87810.11218078109813245No Hit
CTGAGGAATAGGCTGAGGGACCTGCTGCATCAAGGGCTGGAGCAGAGGCAGAGGAAGATGCAGATTTTCAAGATC80140.10238204984858597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)