FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8623077
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC606000.7027653817772936No Hit
GGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGG597820.693279208802148No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGC521370.6046217608865142No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGC457710.5307966054344638No Hit
CGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCG391330.4538171235163504No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA337910.39186707946594934No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG195170.22633452072850563No Hit
AGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGGAGAA186900.21674397665705641No Hit
GAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGG130360.15117573460146533No Hit
ACCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGA112910.13093933870705318No Hit
GAACGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAG98870.11465744768369805No Hit
GTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCAT95070.11025066806199224No Hit
ATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGC92560.10733987415397078No Hit
CATCAATGGCTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTT90150.10454504813073107No Hit
CGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCCAAGCAAC87340.1012863505683644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)