FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9166802
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGAT459950.5017562286171339No Hit
GTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAA351300.38323070575758045No Hit
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT322590.3519111681478448No Hit
ATGGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCG178850.1951062104319478No Hit
GGGGAATGCCTAGGCTCTTGGAGGCGAAGAAAGACGTGGTAAGCTGCGAAAAGCTCCGGGGATTTGCAAACA177900.19406986209585417No Hit
CGATGGGGATGCGTTCCATTAGATAGTAGGCGGGGTAACGGCCCACCTAGTCTTCGATGGATAGGGGTTCTGAG169210.1845900020530606No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG164760.17973552826820086No Hit
GGAAAAGAAAATAAACAATGATTCCCCCAGTAGTGGCGAGCGAACGGGGA150630.1643212103850394No Hit
GTGAAGTTGAAATGTTTGTGATGATGCAATCTCCCCGCGGCTAGACGGAA148980.16252123695919252No Hit
AAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCC146910.16026308847949372No Hit
CATGGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTTTGGGGAGGTGCAAATG136370.14876507641378095No Hit
GATGGGGATGCGTTCCATTAGATAGTAGGCGGGGTAACGGCCCACCTAGT120970.1319653244392101No Hit
CGAGAGGAGAAGAATCCAGACCACCTGCTAAGGTCCCGAAATAACAGCTA110600.12065276418100881No Hit
CGTAGACCCGAAACCAGATGATCTATCCATGGCCAGGCTGAAGGTGTGGT110520.12056549274217988No Hit
GATGCCGATTACCCGCGATGGGACGAAAAGACCCCGTGAACCTTTACTAT110220.12023822484657136No Hit
GTGAAATTGTAGTATCGGTGAAGATGCCGATTACCCGCGATGGGACGAAA109450.11939823724784282No Hit
GTTCCGACCTGCACGAATGGTGTAATGATCTGGACACTGTCTCAACCGTG96560.10533662666652994No Hit
GGAAAAGAAATCAACCGAGATTCTGAAAGTAGCGGCGAGCGAAATTGGAAGAGCCTGCAAGTGATATTGAATTCG93670.1021839459388345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)