FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9614294
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCCTGGCCTGCATCGGTTTGCCGTCCTGCAGGAGAACGTGGCCTGGGGTAATGGGCGAGTCAGTGTGACC161050.16751099976763764No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN140020.14563731876724384No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCA134370.1397606522122165No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA126830.13191816268568446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)