FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10892466
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG466660.4284245642814033No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC307570.2823694836412618No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT298690.27421705975488014No Hit
GGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAA152020.13956435576663723No Hit
CCCGATTATTATCCACGCCAAACTCCTCGACTAGTGAGCTGTTACGCACT148530.13636030628876875No Hit
GTCCCATTCGGAAATCTCCGGATCAAAGGTTATTTGCACCTCCCCGAAGC137880.1265829060196286No Hit
GTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATT136070.12492120700675127No Hit
GCCCACGATAGATAGAGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAAC129970.11932100591362874No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG124130.11395950191627865No Hit
GCTCCGACCGCTTGTAGGCGCACGGTTTCAGGAACTATTTCACTCTTCTG119790.10997509654838492No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT117320.10770747413854677No Hit
GGGGTCATTTTGCCGAATTCCTTAACAATGCTTCTTCCGTCGGCCTTAGG116090.10657825326239256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)