FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10892466
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA323800.29726969081197957No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG317140.29115537289719334No Hit
GTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAA253920.23311525599437263No Hit
GGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGAT193070.17725095492609294No Hit
GGGGAATGCCTAGGCTCTTGGAGGCGAAGAAAGACGTGGTAAGCTGCGAAAAGCTCCGGGGATTTGCAAACA178750.16410425334354958No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAA170860.15686071455260914No Hit
CATGGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTTTGGGGAGGTGCAAATG164110.1506637707200555No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA157140.14426485242184828No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTC156560.14373237428512514No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT152760.1402437244238357No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN139020.12762950097801545No Hit
GTTTGATCCTGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATGCAA137010.12578418881454392No Hit
GTTCCGACCTGCACGAATGGTGTAATGATCTGGACACTGTCTCAACCGTG111100.10199710515506773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)