FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9870718
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT1099651.114052696065271No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT216620.21945718639718No Hit
CATGGATCCCACCACCAGCAGTCAGCAGACAGCTCCAGACACTCAGGCATTGGGCACGGACAAGCTTCATCTGC179430.18178008935114953No Hit
GATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTTAA163630.16577314841736943No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTCAGT160580.1626832009586334No Hit
TCTTGAACTGACTGACTCATGCCAGCCCTACAGAAGTGCCTTTTACGTAT143320.14519713763476982No Hit
AAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCC136410.13819663372005966No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC136280.13806493104149062No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAG136010.1377913947090779No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAA124080.12570514120654647No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGAT121760.12335475494285218No Hit
GAACGAGAGAAGGCAAACTTCAAATTGAGCTGGCTCAGCTGCAATATGCA114110.11560455885782574No Hit
AATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGG113840.11533102252541305No Hit
AAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGG112140.1136087567287405No Hit
CGAATAGAAGCCGTGACGTATATAAATTAGCCTAGTAACTTCCTTCCTGC111980.11344666112434779No Hit
GGACAAGCTTCATCTGCAGTCAGAGACAGTGGACACCGAGGGTACAGTGG110150.11159269264910618No Hit
AATCAACAGAAATCAGGCTCTTATTGTGGACAGTCTGAGAGGCTAGGTCAGGAATTAGGCTGTGGTCAGACAGAC108240.1096576763716682No Hit
GTGCCTTTTACATATTGGAGCAACAGCGTGTTGGCTTGGCTGTTGACACG107440.10884719834970466No Hit
AACATGGTCACTTTAGTAGTCTTTCACAAGATTCTGCGTATCACTCAGGAATACAGTCACGTGGCAGTCCTCAC106210.1076010883909357No Hit
ATCATGAACGCCCTCGTACTATTAAATTATCTCTTACCAAATCATCACAC99960.10126922884434546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)