FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002798837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6932165
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG193100.2785565548425348No Hit
GTGGCTTTAAAAAATTGTTTAGTTCTCCACCGTGTCTCCACAGAAGGAAA159360.22988489166083037No Hit
GTCCACAATCCATAGTACACTGGTCGTGTAGCACGTTCCTGAGTAAAAAAACAGGCTTGCCTCTTGCATCTCCTC150440.21701733873905193No Hit
GCCTCTTGCATCTCCTCAGCCATGTATGTTGGAATCCCACGACACATGTTTGCAATGTTTTTTCCGAACTTGCTC99640.14373575931905833No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGC97310.1403746160110153No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC81700.11785639839790311No Hit
GCCCATATTTTTTCTGCACAGCATATTCAGATGACTAAATCCATAGTGGC81220.11716397402543072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)