FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002798838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6932165
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAAAGAAGCTTCAGGGTAAGGGACCAGGAGGACCACCTCCCAAGGGCCTGATGTACTCAGTCAACCCAAACAA118660.17117307507827642No Hit
GATGTACTCAGTCAACCCAAACAAAGTCGATGACCTGAGCAAGTTCGGAA90530.13059412174984295No Hit
AGGAAAAGAAGCTTCAGGGTAAGGGACCAGGAGGACCACCTCCCAAGGGCCTGATGTACTCAGTCAACCCAAACA81190.1171206975021512No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN75430.10881160503248265No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA70390.10154114912152264No Hit
ACTCAGTCAACCCAAACAAAGTCGATGACCTGAGCAAGTTCGGAAAAAAC70270.10136804302840455No Hit
CCCAAACAAAGTCGATGACCTGAGCAAGTTCGGAAAAAACATTGCAAACA69380.10008417283777868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)