FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9281807
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT342200.368678211042311No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN327550.352894646484246No Hit
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT296730.31968990520919044No Hit
GTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAA169620.18274458841904384No Hit
CCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTT156060.16813536415915564No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA143720.15484053913208926No Hit
GTTTGATCCTGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATGCAA131590.14177196315329546No Hit
GGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGAT113310.12207752218937541No Hit
CACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGG111890.12054764767248445No Hit
CTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATAGTATAGCT96780.10426848996106038No Hit
ATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGT95450.10283557932200056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)