FastQCFastQC Report
Sun 5 Mar 2023
EGAF00002799980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002799980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72236739
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATGAATCATCTCGTAT14131591.9562884753144796TruSeq Adapter, Index 9 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATGAATCATCTCGTATG874370.12104228569897099TruSeq Adapter, Index 9 (97% over 37bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)