FastQCFastQC Report
Sun 5 Mar 2023
EGAF00002800122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002800122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73099474
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTAT9794701.3399138822804662TruSeq Adapter, Index 9 (97% over 38bp)
AATGATACGGCGACCACCGAGAACTCCAGTCACAAGGTACAATCTCGTAT833910.11407879624414262Illumina Single End PCR Primer 1 (96% over 25bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)