FastQCFastQC Report
Thu 5 Jan 2023
EGAF00002830874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002830874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26622340
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1176660.4419821848868281No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA1007250.3783476583951674TruSeq Adapter, Index 20 (97% over 44bp)

[OK]Adapter Content

Adapter graph