FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002830880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002830880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36144849
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC1071950.2965706123160177TruSeq Adapter, Index 6 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1044180.2888876365204901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)