FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002838532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002838532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17687592
Sequences flagged as poor quality0
Sequence length58-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG455150.25732728344253986No Hit
GCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA214680.12137322027780831No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG212160.11994849270607327No Hit
GTAACTTTTTTGTGTATGTACTTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGAT208450.11785097711435226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)