FastQCFastQC Report
Mon 18 Sep 2023
EGAF00002839188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27077624
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA1052130.3885606802133008No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG690170.2548857314807237No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC554790.2048887302667324No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG529200.19543812263587085No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC500440.18481680667402722No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG453820.16759963872753383No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGA453030.16730788491634274No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT406710.15020150955637762No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCC400310.14783793437710785No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT318110.11748076566836145No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG291990.10783442446796661No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)