FastQCFastQC Report
Wed 20 Sep 2023
EGAF00002839190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29287642
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA1154790.39429258251654403No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG1151980.3933331334765701No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG686150.23427970063277884No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG635860.217108635785701No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT434400.14832194411554198No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGA393990.13452431575065005No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC385480.13161865335556888No Hit
TTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGC345940.11811807860803543No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC315330.10766657145017No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)