FastQCFastQC Report
Wed 27 Sep 2023
EGAF00002839230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28339944
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA1302650.4596515787046015No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG971510.34280589968702835No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG713330.25170480223955277No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC667180.2354203663916908No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC382570.13499320958432381No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC372530.1314505067476492No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGA364560.1286382217269025No Hit
TTGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT360330.12714562879870192No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG355860.12556834974691553No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT354310.12502141853209026No Hit
CGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC331970.11713855186164095No Hit
CCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG331050.11681392172122852No Hit
TTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGC302290.10666570124485779No Hit
AGCTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAG288390.10176096325384412No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)