FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002839232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27668401
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA1283000.4637058715463897No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG954030.3448085055583805No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG700470.25316605755424754No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC656300.23720199804824282No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC376770.13617339144390744No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC361810.13076650146858865No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGA360140.1301629248470123No Hit
TTGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT352130.12726792560220593No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT350510.12668242013696418No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG347870.12572826308249616No Hit
CGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC328970.11889736598800921No Hit
CCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG322340.11650113065803838No Hit
TTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGC295650.10685474740661739No Hit
AGCTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAG284270.10274175222485751No Hit
CACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTT276830.10005276416226581No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)