FastQCFastQC Report
Thu 23 Feb 2023
EGAF00002839276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences343128255
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA8460300.2465637812310152No Hit
CCACCTACTAAGAACGGCCATGCACCAC8008740.23340368749288803No Hit
CGTTCGTTATCGGAATTAACCAGACAAA7605640.22165589365410904No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA7556730.22023047912507232No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC5585590.16278432098225196No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC5425280.1581123070147633No Hit
CGTCTACTCTCGACTGCCGGCGACGGCC4149260.12092446306993868No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA4110950.11980797092912095No Hit
ACGAGCTTTTTAACTGCAGCAACTTTAA3943780.1149360317179359No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT3813960.1111526067708997No Hit
CCACCAACTAAGAACGGCCATGCACCAC3555630.10362393502103172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)