FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002839298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences296769308
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA9911470.3339789436716279No Hit
CCACCTACTAAGAACGGCCATGCACC7641060.25747473859392495No Hit
CGTTCGTTATCGGAATTAACCAGACA7030240.23689242150337192No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT6998780.23583233883471533No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA5372720.1810402846644775No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGA4390660.14794858772929442No Hit
GTGGGCAAATTTAAAGTTGAACTAAG3168570.10676879025508931No Hit
GCTTCCAATGATAGGAAGAGCCGACA3043110.10254126413908003No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA2984700.10057306869482609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)