FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002839300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences312629826
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA13059140.41771894150624006No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT10479710.33521145867892976No Hit
CCACCTACTAAGAACGGCCATGCACC8804910.2816401145295715No Hit
CGTTCGTTATCGGAATTAACCAGACA8164230.26114686830935957No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA7214270.23076077200644318No Hit
GCTTCCAATGATAGGAAGAGCCGACA6769560.21653596160719482No Hit
GCTTCACAATGATAGGAAGAGCCGAC5162010.16511572379533615No Hit
CTCGTACTGAGCAGGATTACCATGGC4974620.15912173395765508No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA4954350.15847336331882808No Hit
CGTCCATTCTCGACTGCCGGCGACGG4944400.15815509554101215No Hit
ACACCAAATGTCTGAACCTGCGGTTC4412570.1411436028499725No Hit
TGCCCTCCAATGGATCCTCGTTAAAG4318700.13814101025664774No Hit
TGCCCTACAATGGATCCTCGTTAAAG4274400.13672399894436177No Hit
ACACCCTCATGTCTCTTCACCGTGCC4106720.13136046718715827No Hit
CCCTCCTAATCATGGCCTCAGTTCCG3848720.12310789566188096No Hit
CTACACCTCTCATGTCTCTTCACCGT3422590.10947739835929794No Hit
GTGCGGTGTGTACAAAGGGCAGGGAC3357170.10738482770354739No Hit
GAACCTACGGTTCCTCTCGTACTGAG3313850.10599916336837291No Hit
CGCTTCACAATGATAGGAAGAGCCGA3174200.10153221912998153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)