FastQCFastQC Report
Wed 22 Feb 2023
EGAF00002839302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences314556268
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA13557620.4310077839555243No Hit
CGTTCGTTATCGGAATTAACCAGACA11644540.3701894123438672No Hit
CCACCTACTAAGAACGGCCATGCACC11087850.3524917837593368No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT8237010.261861257840203No Hit
AGGCCGTATCGTTCCGCCTGGGCGGG6991390.22226198334728461No Hit
TTGCCGTATCGTTCCGCCTGGGCGGG6904640.21950413017997783No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA5377450.17095351601768113No Hit
TGCCCTACAATGGATCCTCGTTAAAG4860930.15453292445598318No Hit
CCACCAACTAAGAACGGCCATGCACC3901600.12403504227739631No Hit
TGCCCTCCAATGGATCCTCGTTAAAG3899470.1239673278422797No Hit
ACGGGCTTTTTAACTGCAGCAACTTT3845430.12224935222082428No Hit
GGGTTGCGTAACTAGTTAGCATGCCA3751560.11926514845350339No Hit
ACGGCCATGCACCACCACCCACGGAA3705540.11780213516520993No Hit
CTCGTACTGAGCAGGATTACCATGGC3256910.10353982200729822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)