FastQCFastQC Report
Wed 22 Feb 2023
EGAF00002839310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341373851
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA9318530.27297140576827605No Hit
CGTTCGTTATCGGAATTAACCAGACA7780170.22790761440014337No Hit
CCACCTACTAAGAACGGCCATGCACC7017140.20555587311226134No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT5084960.14895575584083037No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA4373560.12811643267896344No Hit
CGTCCATTCTCGACTGCCGGCGACGG3590930.10519054079511204No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA3536650.10360049516505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)