FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002839318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305719947
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA5768290.18867888917957978No Hit
CCACCTACTAAGAACGGCCATGCACCAC5132480.16788175094116445No Hit
CGTTCGTTATCGGAATTAACCAGACAAA4439790.14522408640872883No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC3633200.11884078993380173No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT3434030.11232600403401222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)