FastQCFastQC Report
Tue 14 Feb 2023
EGAF00002839320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences350336616
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC9840140.28087672114752626No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA8501450.24266518575951534No Hit
CGTTCGTTATCGGAATTAACCAGACAAA8263660.23587771367866384No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC5291390.1510373097855121No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA4589020.13098887728024408No Hit
CCACCAACTAAGAACGGCCATGCACCAC4412520.12595086549560094No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA3930320.11218696021200365No Hit
TTCGGTCTTGATTAATGAAAACATTCTT3717880.10612307792571701No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG3538960.10101598971887084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)