FastQCFastQC Report
Tue 14 Feb 2023
EGAF00002839322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences353011394
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA18058660.5115602585904069No Hit
CCACCTACTAAGAACGGCCATGCACCAC14688440.41608968576238076No Hit
CGTTCGTTATCGGAATTAACCAGACAAA12346670.3497527334769257No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA7263270.2057517157647325No Hit
CCACCAACTAAGAACGGCCATGCACCAC6791430.19238557495399142No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC6716550.19026439696164596No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT5738270.1625519770050255No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT5648060.15999653540927916No Hit
AGCTCCTTTAAGTTTCAGCTTTGCAACC5120410.14504942579842056No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA4823080.1366267514866673No Hit
AGTTGGTTGATTGTAGATATTGGGCTGT4114600.1165571443283216No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA3690550.10454478418336832No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC3665050.10382242789591092No Hit
TTCGGTCTTGATTAATGAAAACATTCTT3605250.10212843158257945No Hit
CGTTCTGATTAATGAAAACATTCTTGGC3594080.10181201120097556No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA3549900.1005604935233337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)