FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002839329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42802183
Sequences flagged as poor quality0
Sequence length31
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTGCAAAAAAAAAAAAAAAAAAAAAAAN1088200.25423936905274197No Hit
TCCGAATTCAAAAAAAAAAAAAAAAAAAAAN991910.23174285292878638No Hit
CCTCTGCAATAAAAAAAAAAAAAAAAAAAAN843500.19706938779267402No Hit
GTAGTCACAGCGAAAAAAAAAAAAAAAAAAN785060.1834158785779688No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAN761770.17797456732522265No Hit
CATCATCTTACAAAAAAAAAAAAAAAAAAAN701830.16397060869535557No Hit
TTCTCAGATGTAAAAAAAAAAAAAAAAAAAN658240.1537865486907525No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN614910.14366323325144423No Hit
CGGCCAAAAAAAAAAAAAAAAAAAAAAAAAN614750.1436258519804936No Hit
GTGCCACTCAAAAAAAAAAAAAAAAAAAAAN593460.13865180661462992No Hit
CTGAGGCCCAAAAAAAAAAAAAAAAAAAAAN592460.13841817367118867No Hit
TACAAAAAAAAAAAAAAAAAAAAAAAAAAAN582840.1361706247552841No Hit
TTGCTCGAAAAAAAAAAAAAAAAAAAAAAAN555560.12979711805820746No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAN547170.12783693766273557No Hit
TGGTCCAAAAAAAAAAAAAAAAAAAAAAAAN501780.11723233835993832No Hit
GACTCAAAAAAAAAAAAAAAAAAAAAAAAAN468480.10945236134334552No Hit
CATTTACGAGACCCGAAAAAAAAAAAAAAAN455170.10634270686614279No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN452050.10561377208260615No Hit
TCAACTCACAAAAAAAAAAAAAAAAAAAAAN439660.10271905991336937No Hit
ATATGGGTGTAAAAAAAAAAAAAAAAAAAAN430970.10068878963486513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)