FastQCFastQC Report
Wed 20 Sep 2023
EGAF00002839334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40923584
Sequences flagged as poor quality0
Sequence length35-121
%GC54

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36148138.833080211156481No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1694460.4140546438943373No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG526150.12856889562751886No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA463180.11318168027511959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)