FastQCFastQC Report
Mon 13 May 2024
EGAF00002839358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86567722
Total Bases10.4 Gbp
Sequences flagged as poor quality0
Sequence length35-121
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11943321.379650489128038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11768051.3594039126962356No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1306430.15091421719518044No Hit
CAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAAC1117010.1290330823306174No Hit
GGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAAC896570.10356862572865207No Hit
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTAT892950.10315045600945813No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC868010.10026947457390642No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)