FastQCFastQC Report
Thu 23 Mar 2023
EGAF00002839360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67086957
Sequences flagged as poor quality0
Sequence length121
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9906241.4766268203221677No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3063630.4566655184553981No Hit
CAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAAC851600.12693972689803176No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG754770.11250622084409045No Hit
GGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAAC728990.10866344705424633No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC715880.1067092668996747No Hit
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTAT694480.10351937709739913No Hit
TGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA688450.10262054366245886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)