FastQCFastQC Report
Sat 23 Apr 2022
EGAF00002839435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002839435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42887953
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT135050.037.66509269
TATCTCG199550.025.61182268
ACGGACT1152450.021.51796769
GAGACGG3111600.019.4561269
CGAGACG4190900.019.26341669
GACGGAC1561300.018.99304669
CGGACTC820200.017.65014669
AGACGGA2147350.017.55557369
CGTGCGA29950.016.9303210
ACGAGAC5417600.015.99978869
TATACCG27000.014.1807546
CTATCTC378000.013.97667367
TATGCCG38650.013.29968143
TATACTG167450.013.1835825
TCGTTCG24950.013.13420723
CACGAGA6633650.013.0652568
CCGTGCG67600.013.06281959
TCGTATG39750.012.84498440
CCTATCT418300.012.70458266
TCGTTGT33300.012.63865334
Produced by FastQC (version 0.11.5)