EGAF00002854378 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00002854378
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417479874
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATC	30630	0.0	9.91761	3
CCGATCT	42290	0.0	7.4057627	4
CGCCGTA	29440	0.0	7.299365	55-59
TTCCGAT	49760	0.0	6.3525214	2
GTCGCCG	41410	0.0	6.1593566	55-59
GCGTCGT	227160	0.0	6.1149964	145
CGTCGTG	222050	0.0	6.053291	145
AGCGTCG	238415	0.0	5.874976	145
AGCGACG	17560	0.0	5.779992	9
GTCGTGT	240195	0.0	5.7559805	145
TCGCCGT	38460	0.0	5.711867	55-59
CGTGTAG	289770	0.0	5.504297	145
CTTCCGA	62515	0.0	5.364778	1
GAGCGTC	277460	0.0	5.353948	145
GATCGGA	353325	0.0	5.353432	145
CAGTACG	99405	0.0	5.345992	145
TCGTGTA	238090	0.0	5.30444	145
ATCGGAA	370880	0.0	5.236871	145
AGAGCGT	313145	0.0	5.0401735	145