EGAF00002854593 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00002854593
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	385433644
Sequences flagged as poor quality	0
Sequence length	151
%GC	39

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	91850	0.0	20.691372	1
TCGGAAG	100185	0.0	18.935938	2
CGGAAGA	114255	0.0	16.67393	3
TATGCCG	56430	0.0	7.148317	45-49
CGTATGC	64650	0.0	6.3156905	45-49
AGAGCAC	350725	0.0	6.0474324	7
AGCACAC	387005	0.0	5.671549	9
CTCGTAT	58960	0.0	5.60921	40-44
ATGCCGT	76100	0.0	5.52167	45-49
GAGCACA	392510	0.0	5.5051813	8
TGCCGTC	75020	0.0	5.498724	45-49
GAAGAGC	398040	0.0	5.4817104	5
TCTCGTA	61740	0.0	5.4505763	40-44
GCCGTCT	77435	0.0	5.316233	50-54
TATCTCG	64145	0.0	5.2100515	40-44
TCGTATG	66130	0.0	5.047086	40-44