EGAF00002855265 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00002855265
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	407323310
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATC	28870	0.0	9.643272	3
CCGATCT	40345	0.0	6.9544277	4
TTCCGAT	48615	0.0	6.248615	2
GTACGTC	121905	0.0	6.1910305	145
GCGTCGT	260305	0.0	5.865562	145
TACGTCC	127685	0.0	5.632556	145
AGCGTCG	273165	0.0	5.626581	145
GTGTACG	149445	0.0	5.544962	145
GTCGTGT	271965	0.0	5.440812	145
GTCGCCG	40245	0.0	5.4403744	145
CGTCGTG	253675	0.0	5.4215493	145
CGCCGTA	29770	0.0	5.3089843	145
TGGTCGC	59770	0.0	5.2521653	145
CTTCCGA	59910	0.0	5.167776	1
CGTCCTG	152645	0.0	5.1199994	145
TCGTGTA	268595	0.0	5.0421143	145
GAGCGTC	311295	0.0	5.0282197	145