EGAF00002855723 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00002855723
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	328007820
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	71445	0.0	24.166145	1
TCGGAAG	79400	0.0	21.637993	2
CGGAAGA	92095	0.0	18.812872	3
TATGCCG	45995	0.0	7.8811607	45-49
CGTATGC	53415	0.0	6.930242	45-49
AGAGCAC	295040	0.0	6.5009284	7
TACTCGA	58290	0.0	6.327784	35-39
CTCGTAT	48065	0.0	6.2743773	40-44
TTACTCG	59080	0.0	6.2553205	30-34
TCTCGTA	50445	0.0	6.015716	40-44
AGCACAC	324695	0.0	5.9897804	9
ACTCGAT	63640	0.0	5.9621396	35-39
GAGCACA	331605	0.0	5.9174	8
TGCCGTC	63795	0.0	5.8708177	45-49
GAAGAGC	335860	0.0	5.8254	5
ATGCCGT	65255	0.0	5.7705736	45-49
GCCGTCT	65080	0.0	5.7461944	50-54
TCGTATG	55210	0.0	5.5070233	40-44
ACACGTC	76980	0.0	5.0151696	10-14