FastQCFastQC Report
Fri 18 Nov 2022
EGAF00002859998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002859998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences992421568
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT46937920.47296352188911717No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA35407380.3567776148935933No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT19021660.19166915163214188Illumina Single End PCR Primer 1 (100% over 50bp)
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC13948040.1405455146254943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)