FastQCFastQC Report
Fri 13 May 2022
EGAF00002860052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences915711925
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT50036810.5464252308388361No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC36192490.3952388192389217Illumina Single End PCR Primer 1 (96% over 32bp)
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA33408220.3648332962356038No Hit
CTGCACATTGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9158980.10002032025519379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)