FastQCFastQC Report
Fri 18 Nov 2022
EGAF00002860056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1050760407
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT72204710.6871662609190793No Hit
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA59053100.5620034748796925No Hit
CCGTAAATTACGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC16257460.1547209039443756No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT14350740.1365748072005534Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)