FastQCFastQC Report
Fri 13 May 2022
EGAF00002860091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1021085155
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT95320170.9335183214959188No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA52586320.5150042554482148No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG26357500.2581322416738102TruSeq Adapter, Index 19 (97% over 37bp)
CTGCACATTGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC18710810.18324436417842155No Hit
CTGCACATTGGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC16573500.1623126133882536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)