FastQCFastQC Report
Thu 17 Nov 2022
EGAF00002860109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1050597835
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCTTCGATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT39132050.3724741161302698No Hit
GGTCCTTCGATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA26807500.25516424179572006No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTATG13339370.12696932694516738TruSeq Adapter, Index 15 (97% over 39bp)
GGTCCTTCGATGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10629560.10117629835016745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)